The getting started tutorial for AMBER, Quintessa's Compartment Modelling Software, has recently been converted into a series of tutorial videos, with additional explanations and information. The ...
OpenMM enables users to perform molecular dynamics (MD) simulations using AMBER topology (.prmtop) and coordinate (.inpcrd) files as input. However, obtaining these essential Amber files can be a ...
![Alt text](/figures/m2_setup.png?raw=true "M2_IXO") *Disclaimer: I hope this tutorial will be useful to others wishing to run molecular dynamics simulations of ...
Availability is an internal parameter in AMBER that describes the fraction of the Amount that is available to a limited transfer This video covers section 9.3 of the User Guide.